SAMTools in C
This is the C implementation of SAMTools. This implementation comes as a library in C and a command line tool that packages several utilities including:
- import: SAM-to-BAM conversion
- view: BAM-to-SAM conversion and subalignment retrieval
- sort: sorting alignment
- merge: merging multiple sorted alignments
- index: indexing sorted alignment
- faidx: FASTA indexing and subsequence retrieval
- tview: text alignment viewer
- pileup: generating position-based output and consensus/indel calling